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VPS18 VPS18 core subunit of CORVET and HOPS complexes [ Coturnix japonica (Japanese quail) ]

Gene ID: 107314829, updated on 14-Mar-2024

Summary

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Gene symbol
VPS18
Gene description
VPS18 core subunit of CORVET and HOPS complexes
See related
Ensembl:ENSCJPG00005014325
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 5 NC_029520.1 (21729676..21739028)

Chromosome 5 - NC_029520.1Genomic Context describing neighboring genes Neighboring gene serine peptidase inhibitor, Kunitz type 1 Neighboring gene ras homolog family member V Neighboring gene uncharacterized LOC107314719 Neighboring gene delta like canonical Notch ligand 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029520.1 Chromosome 5 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lysosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 18 homolog
Names
VPS18, CORVET/HOPS core subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029520.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    21729676..21739028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015864539.2 → XP_015720025.1  vacuolar protein sorting-associated protein 18 homolog isoform X2

    Conserved Domains (3) summary
    smart00299
    Location:573 → 700
    CLH; Clathrin heavy chain repeat homology
    pfam00637
    Location:559 → 675
    Clathrin; Region in Clathrin and VPS
    pfam05131
    Location:223 → 367
    Pep3_Vps18; Pep3/Vps18/deep orange family

  2. XM_015864538.2 → XP_015720024.1  vacuolar protein sorting-associated protein 18 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C2TUJ5
    Related
    ENSCJPP00005017594.1, ENSCJPT00005024482.1
    Conserved Domains (3) summary
    smart00299
    Location:641 → 768
    CLH; Clathrin heavy chain repeat homology
    pfam00637
    Location:627 → 743
    Clathrin; Region in Clathrin and VPS
    pfam05131
    Location:291 → 435
    Pep3_Vps18; Pep3/Vps18/deep orange family
Nucleotide Protein
Heading Accession and Version

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