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IGHMBP2 immunoglobulin mu DNA binding protein 2 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107314263, updated on 14-Mar-2024

Summary

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Gene symbol
IGHMBP2
Gene description
immunoglobulin mu DNA binding protein 2
See related
Ensembl:ENSCJPG00005013699
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 5 NC_029520.1 (1256411..1279853)

Chromosome 5 - NC_029520.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116653509 Neighboring gene ras-related and estrogen-regulated growth inhibitor-like Neighboring gene mitochondrial ribosomal protein L21 Neighboring gene synaptotagmin 12 Neighboring gene phosphatidylserine synthase 2 Neighboring gene anoctamin 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029520.1 Chromosome 5 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SMUBP-2
Names
immunoglobulin mu binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029520.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    1256411..1279853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015863332.2 → XP_015718818.1  DNA-binding protein SMUBP-2

    UniProtKB/TrEMBL
    A0A8C2TPG3
    Related
    ENSCJPP00005016698.1, ENSCJPT00005023412.1
    Conserved Domains (5) summary
    cd02641
    Location:708 → 766
    R3H_Smubp-2_like; R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most ...
    TIGR00376
    Location:27 → 637
    TIGR00376; DNA helicase, putative
    pfam01428
    Location:886 → 922
    zf-AN1; AN1-like Zinc finger
    pfam13087
    Location:414 → 611
    AAA_12; AAA domain
    pfam13245
    Location:194 → 256
    AAA_19; Part of AAA domain
Nucleotide Protein
Heading Accession and Version

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