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COL26A1 collagen type XXVI alpha 1 chain [ Parus major (Great Tit) ]

Gene ID: 107212788, updated on 3-Aug-2024

Summary

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Gene symbol
COL26A1
Gene description
collagen type XXVI alpha 1 chain
See related
Ensembl:ENSPMJG00000018957
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
22
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 19 NC_031787.1 (3004484..3173426)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 19 NC_029287.1 (2988088..3173426)

Chromosome 19 - NC_031787.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117245292 Neighboring gene intraflagellar transport 22 Neighboring gene myosin light chain 10 Neighboring gene uncharacterized LOC117245295

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XXVI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031787.1 Reference Parus_major1.1 Primary Assembly

    Range
    3004484..3173426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033518891.1 → XP_033374782.1  collagen alpha-1(XXVI) chain isoform X9

    Conserved Domains (2) summary
    pfam01391
    Location:266 → 320
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:1 → 18
    EMI; EMI domain

  2. XM_033518889.1 → XP_033374780.1  collagen alpha-1(XXVI) chain isoform X8

    Conserved Domains (2) summary
    pfam01391
    Location:326 → 380
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:10 → 78
    EMI; EMI domain

  3. XM_033518890.1 → XP_033374781.1  collagen alpha-1(XXVI) chain isoform X8

    Conserved Domains (2) summary
    pfam01391
    Location:326 → 380
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:10 → 78
    EMI; EMI domain

  4. XM_015646409.3 → XP_015501895.1  collagen alpha-1(XXVI) chain isoform X5

    Conserved Domains (2) summary
    pfam01391
    Location:368 → 422
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:52 → 120
    EMI; EMI domain

  5. XM_033518883.1 → XP_033374774.1  collagen alpha-1(XXVI) chain isoform X1

    Conserved Domains (2) summary
    pfam01391
    Location:368 → 422
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:52 → 120
    EMI; EMI domain

  6. XM_033518885.1 → XP_033374776.1  collagen alpha-1(XXVI) chain isoform X3

    Related
    ENSPMJP00000025921.1, ENSPMJT00000033414.1
    Conserved Domains (2) summary
    pfam01391
    Location:368 → 422
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:52 → 120
    EMI; EMI domain

  7. XM_033518887.1 → XP_033374778.1  collagen alpha-1(XXVI) chain isoform X6

    Conserved Domains (2) summary
    pfam01391
    Location:369 → 407
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:52 → 120
    EMI; EMI domain

  8. XM_033518886.1 → XP_033374777.1  collagen alpha-1(XXVI) chain isoform X4

    Related
    ENSPMJP00000025920.1, ENSPMJT00000033413.1
    Conserved Domains (2) summary
    pfam01391
    Location:354 → 408
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:52 → 120
    EMI; EMI domain

  9. XM_033518884.1 → XP_033374775.1  collagen alpha-1(XXVI) chain isoform X2

    Conserved Domains (2) summary
    pfam01391
    Location:366 → 420
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:52 → 118
    EMI; EMI domain

  10. XM_033518888.1 → XP_033374779.1  collagen alpha-1(XXVI) chain isoform X7

    Conserved Domains (2) summary
    pfam01391
    Location:352 → 406
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:52 → 118
    EMI; EMI domain
Nucleotide Protein
Heading Accession and Version

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