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COL5A1 collagen type V alpha 1 chain [ Parus major (Great Tit) ]

Gene ID: 107212137, updated on 3-Aug-2024

Summary

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Gene symbol
COL5A1
Gene description
collagen type V alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See COL5A1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
68
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 17 NC_031785.1 (3058422..3194277, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 17 NC_029285.1 (3058422..3194277, complement)

Chromosome 17 - NC_031785.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107211926 Neighboring gene olfactomedin 1 Neighboring gene uncharacterized LOC117245219 Neighboring gene uncharacterized LOC107211918 Neighboring gene retinoid X receptor alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(V) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031785.1 Reference Parus_major1.1 Primary Assembly

    Range
    3058422..3194277 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015645070.1 → XP_015500556.1  collagen alpha-1(V) chain isoform X4

    Conserved Domains (3) summary
    pfam01391
    Location:869 → 928
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:36 → 227
    TSPN; Thrombospondin N-terminal -like domains
    pfam01410
    Location:1447 → 1673
    COLFI; Fibrillar collagen C-terminal domain

  2. XM_015645066.1 → XP_015500552.1  collagen alpha-1(V) chain isoform X2

    Conserved Domains (3) summary
    pfam01391
    Location:869 → 928
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:36 → 227
    TSPN; Thrombospondin N-terminal -like domains
    pfam01410
    Location:1609 → 1835
    COLFI; Fibrillar collagen C-terminal domain

  3. XM_015645065.1 → XP_015500551.1  collagen alpha-1(V) chain isoform X1

    Conserved Domains (3) summary
    pfam01391
    Location:869 → 928
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:36 → 227
    TSPN; Thrombospondin N-terminal -like domains
    pfam01410
    Location:1609 → 1835
    COLFI; Fibrillar collagen C-terminal domain

  4. XM_015645067.1 → XP_015500553.1  collagen alpha-1(V) chain isoform X3

    Conserved Domains (3) summary
    pfam01391
    Location:869 → 928
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:36 → 227
    TSPN; Thrombospondin N-terminal -like domains
    cl02436
    Location:1609 → 1709
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

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