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ARVCF ARVCF delta catenin family member [ Parus major (Great Tit) ]

Gene ID: 107211542, updated on 3-Aug-2024

Summary

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Gene symbol
ARVCF
Gene description
ARVCF delta catenin family member
See related
Ensembl:ENSPMJG00000014218
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
25
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 15 NC_031784.1 (7068239..7316298)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 15 NC_029284.1 (7068240..7316300)

Chromosome 15 - NC_031784.1Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 2 homolog A Neighboring gene DGCR8 microprocessor complex subunit Neighboring gene transport and golgi organization 2 homolog Neighboring gene uncharacterized LOC117245176 Neighboring gene uncharacterized LOC117245175 Neighboring gene catechol-O-methyltransferase Neighboring gene thioredoxin reductase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
armadillo repeat protein deleted in velo-cardio-facial syndrome
Names
armadillo repeat gene deleted in velocardiofacial syndrome

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031784.1 Reference Parus_major1.1 Primary Assembly

    Range
    7068239..7316298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015643618.3 → XP_015499104.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X1

    Conserved Domains (3) summary
    smart00185
    Location:431 → 471
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:474 → 515
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:402 → 427
    ARM; armadillo repeat [structural motif]

  2. XM_015643626.3 → XP_015499112.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X5

    Conserved Domains (3) summary
    smart00185
    Location:431 → 471
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:474 → 515
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:402 → 427
    ARM; armadillo repeat [structural motif]

  3. XM_015643623.3 → XP_015499109.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X2

    Conserved Domains (3) summary
    smart00185
    Location:431 → 471
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:474 → 515
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:402 → 427
    ARM; armadillo repeat [structural motif]

  4. XM_015643624.3 → XP_015499110.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X3

    Conserved Domains (3) summary
    smart00185
    Location:418 → 458
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:461 → 502
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:389 → 414
    ARM; armadillo repeat [structural motif]

  5. XM_015643621.3 → XP_015499107.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X1

    Conserved Domains (3) summary
    smart00185
    Location:431 → 471
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:474 → 515
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:402 → 427
    ARM; armadillo repeat [structural motif]

  6. XM_015643625.3 → XP_015499111.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X4

    Conserved Domains (3) summary
    smart00185
    Location:418 → 458
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:461 → 502
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:389 → 414
    ARM; armadillo repeat [structural motif]

  7. XM_015643630.3 → XP_015499116.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X8

    Conserved Domains (3) summary
    smart00185
    Location:335 → 375
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:378 → 419
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:306 → 331
    ARM; armadillo repeat [structural motif]

  8. XM_015643620.3 → XP_015499106.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X1

    Conserved Domains (3) summary
    smart00185
    Location:431 → 471
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:474 → 515
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:402 → 427
    ARM; armadillo repeat [structural motif]

  9. XM_015643631.3 → XP_015499117.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X8

    Related
    ENSPMJP00000018955.1, ENSPMJT00000024777.1
    Conserved Domains (3) summary
    smart00185
    Location:335 → 375
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:378 → 419
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:306 → 331
    ARM; armadillo repeat [structural motif]

  10. XM_015643619.3 → XP_015499105.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X1

    Conserved Domains (3) summary
    smart00185
    Location:431 → 471
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:474 → 515
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:402 → 427
    ARM; armadillo repeat [structural motif]

  11. XM_015643627.3 → XP_015499113.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X6

    Related
    ENSPMJP00000018950.1, ENSPMJT00000024772.1
    Conserved Domains (3) summary
    smart00185
    Location:366 → 406
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:409 → 450
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:337 → 362
    ARM; armadillo repeat [structural motif]

  12. XM_015643629.3 → XP_015499115.1  armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X7

    Related
    ENSPMJP00000018953.1, ENSPMJT00000024775.1
    Conserved Domains (3) summary
    smart00185
    Location:353 → 393
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:396 → 437
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:324 → 349
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
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