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PDLIM4 PDZ and LIM domain 4 [ Parus major (Great Tit) ]

Gene ID: 107210732, updated on 3-Aug-2024

Summary

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Gene symbol
PDLIM4
Gene description
PDZ and LIM domain 4
See related
Ensembl:ENSPMJG00000014450
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 13 NC_031782.1 (10570096..10614356)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 13 NC_029282.1 (10570094..10614356)

Chromosome 13 - NC_031782.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117245127 Neighboring gene prolyl 4-hydroxylase subunit alpha 2 Neighboring gene solute carrier family 22 member 4 Neighboring gene solute carrier family 22 member 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031782.1 Reference Parus_major1.1 Primary Assembly

    Range
    10570096..10614356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015641949.2 → XP_015497435.1  PDZ and LIM domain protein 4

    Related
    ENSPMJP00000019268.1, ENSPMJT00000025186.1
    Conserved Domains (3) summary
    cd00992
    Location:3 → 80
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:134 → 225
    DUF4749; Domain of unknown function (DUF4749)
    cl02475
    Location:255 → 307
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Nucleotide Protein
Heading Accession and Version

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