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SMPD1 sphingomyelin phosphodiesterase 1 [ Parus major (Great Tit) ]

Gene ID: 107198374, updated on 3-Aug-2024

Summary

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Gene symbol
SMPD1
Gene description
sphingomyelin phosphodiesterase 1
See related
Ensembl:ENSPMJG00000005650
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See SMPD1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 1 NC_031768.1 (371937..376605)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 1 NC_029268.1 (371937..376605)

Chromosome 1 - NC_031768.1Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide gated channel subunit alpha 4 Neighboring gene cholecystokinin B receptor Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene tripartite motif containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031768.1 Reference Parus_major1.1 Primary Assembly

    Range
    371937..376605
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015615396.1 → XP_015470882.1  sphingomyelin phosphodiesterase

    Related
    ENSPMJP00000006768.1, ENSPMJT00000009423.1
    Conserved Domains (2) summary
    cd00842
    Location:199 → 507
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
    pfam00149
    Location:286 → 470
    Metallophos; Calcineurin-like phosphoesterase
Nucleotide Protein
Heading Accession and Version

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