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Rorc RAR related orphan receptor C [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107156792, updated on 1-Aug-2024

Summary

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Gene symbol
Rorc
Gene description
RAR related orphan receptor C
See related
Ensembl:ENSMMMG00000018387
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000079.1 (5372343..5396618)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351295.1 (5372351..5396634)

NW_026000079.1Genomic Context describing neighboring genes Neighboring gene thioesterase superfamily member 4 Neighboring gene thioesterase superfamily member 5 Neighboring gene uncharacterized LOC125620274 Neighboring gene leucine rich repeat and Ig domain containing 4 Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene tudor and KH domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor ROR-gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000079.1 Reference marMar

    Range
    5372343..5396618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015502902.2 → XP_015358388.1  nuclear receptor ROR-gamma isoform X4

    UniProtKB/TrEMBL
    A0A8C5ZXD5
    Related
    ENSMMMP00000020861.1
    Conserved Domains (2) summary
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:267 → 466
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_048814839.1 → XP_048670796.1  nuclear receptor ROR-gamma isoform X2

    UniProtKB/TrEMBL
    A0AAJ8ASG5

  3. XM_015502901.2 → XP_015358387.1  nuclear receptor ROR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C6A092
    Related
    ENSMMMP00000020854.1
    Conserved Domains (2) summary
    cd06939
    Location:267 → 505
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  4. XM_048814842.1 → XP_048670799.1  nuclear receptor ROR-gamma isoform X5

    UniProtKB/TrEMBL
    A0AAJ8AT33

  5. XM_048814843.1 → XP_048670800.1  nuclear receptor ROR-gamma isoform X5

    UniProtKB/TrEMBL
    A0AAJ8AT33

  6. XM_048814841.1 → XP_048670798.1  nuclear receptor ROR-gamma isoform X5

    UniProtKB/TrEMBL
    A0AAJ8AT33

  7. XM_048814840.1 → XP_048670797.1  nuclear receptor ROR-gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C5ZZI0

  8. XM_015502906.2 → XP_015358392.1  nuclear receptor ROR-gamma isoform X5

    UniProtKB/TrEMBL
    A0AAJ8AT33
    Conserved Domains (2) summary
    cd06939
    Location:172 → 410
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cl02596
    Location:1 → 23
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
Nucleotide Protein
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