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Ldb2 LIM domain binding 2 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107139144, updated on 1-Aug-2024

Summary

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Gene symbol
Ldb2
Gene description
LIM domain binding 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000108.1 (11502111..11845722, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351219.1 (11502111..11576935, complement)

NW_026000108.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene prominin 1 Neighboring gene uncharacterized LOC125610938 Neighboring gene transmembrane anterior posterior transformation 1 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene transfer RNA alanine (anticodon CGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables LIM domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM domain-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000108.1 Reference marMar

    Range
    11502111..11845722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048784244.1 → XP_048640201.1  LIM domain-binding protein 2 isoform X12

    UniProtKB/TrEMBL
    A0AAJ7Z5E7

  2. XM_048784243.1 → XP_048640200.1  LIM domain-binding protein 2 isoform X11

    UniProtKB/TrEMBL
    A0AAJ7Z4W3

  3. XM_015481977.2 → XP_015337463.2  LIM domain-binding protein 2 isoform X16

    UniProtKB/TrEMBL
    A0AAJ7EU96

  4. XM_048784232.1 → XP_048640189.1  LIM domain-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0AAJ8CNX0

  5. XM_048784234.1 → XP_048640191.1  LIM domain-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0AAJ8CNW6

  6. XM_048784231.1 → XP_048640188.1  LIM domain-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0AAJ7Z4Y8

  7. XM_048784233.1 → XP_048640190.1  LIM domain-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0AAJ8CP06

  8. XM_048784237.1 → XP_048640194.1  LIM domain-binding protein 2 isoform X7

    UniProtKB/TrEMBL
    A0AAJ7Z4N8

  9. XM_048784236.1 → XP_048640193.1  LIM domain-binding protein 2 isoform X6

    UniProtKB/TrEMBL
    A0AAJ8CP96

  10. XM_048784235.1 → XP_048640192.1  LIM domain-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8C5ZRL2

  11. XM_048784240.1 → XP_048640197.1  LIM domain-binding protein 2 isoform X9

    UniProtKB/TrEMBL
    A0AAJ7Z5D3

  12. XM_048784239.1 → XP_048640196.1  LIM domain-binding protein 2 isoform X8

    UniProtKB/TrEMBL
    A0AAJ7Z4L4

  13. XM_048784247.1 → XP_048640204.1  LIM domain-binding protein 2 isoform X15

    UniProtKB/TrEMBL
    A0AAJ8CNX5

  14. XM_048784242.1 → XP_048640199.1  LIM domain-binding protein 2 isoform X10

    UniProtKB/TrEMBL
    A0AAJ7Z509

  15. XM_048784238.1 → XP_048640195.1  LIM domain-binding protein 2 isoform X8

    UniProtKB/TrEMBL
    A0AAJ7Z4L4

  16. XM_048784246.1 → XP_048640203.1  LIM domain-binding protein 2 isoform X14

    UniProtKB/TrEMBL
    A0AAJ7Z4Z9

  17. XM_048784245.1 → XP_048640202.1  LIM domain-binding protein 2 isoform X13

    UniProtKB/TrEMBL
    A0A8C5ZUU1
Nucleotide Protein
Heading Accession and Version

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