U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Col4a4 collagen type IV alpha 4 chain [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107138754, updated on 1-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
Col4a4
Gene description
collagen type IV alpha 4 chain
See related
Ensembl:ENSMMMG00000000139
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
55
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000005.1 (42957996..43105625, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351218.1 (42974993..43104657, complement)

NW_026000005.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 28 homolog Neighboring gene rhomboid domain containing 1 Neighboring gene uncharacterized LOC125618265 Neighboring gene small nucleolar RNA SNORA66 Neighboring gene collagen type IV alpha 3 chain Neighboring gene uncharacterized LOC125618264 Neighboring gene mitochondrial fission factor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-4(IV) chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000005.1 Reference marMar

    Range
    42957996..43105625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048808630.1 → XP_048664587.1  collagen alpha-4(IV) chain isoform X2

    UniProtKB/TrEMBL
    A0AAJ8AH92

  2. XM_048808629.1 → XP_048664586.1  collagen alpha-4(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0AAJ8DCF4

  3. XM_048808628.1 → XP_048664585.1  collagen alpha-4(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0AAJ8DCF4

  4. XM_048808627.1 → XP_048664584.1  collagen alpha-4(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0AAJ8DCF4

  5. XM_048808632.1 → XP_048664589.1  collagen alpha-4(IV) chain isoform X4

    UniProtKB/TrEMBL
    A0AAJ8AGJ4

  6. XM_015481469.2 → XP_015336955.1  collagen alpha-4(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0AAJ8DCF4
    Related
    ENSMMMP00000000229.1
    Conserved Domains (2) summary
    pfam01391
    Location:888 → 947
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1458 → 1562
    C4; C-terminal tandem repeated domain in type 4 procollagen

  7. XM_048808625.1 → XP_048664582.1  collagen alpha-4(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0AAJ8DCF4

  8. XM_048808626.1 → XP_048664583.1  collagen alpha-4(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0AAJ8DCF4

  9. XM_048808624.1 → XP_048664581.1  collagen alpha-4(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0AAJ8DCF4

  10. XM_048808631.1 → XP_048664588.1  collagen alpha-4(IV) chain isoform X3

    UniProtKB/TrEMBL
    A0AAJ8AFQ3

RNA

  1. XR_007349514.1 RNA Sequence

  2. XR_007349513.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.