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Lims2 LIM zinc finger domain containing 2 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107136793, updated on 1-Aug-2024

Summary

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Gene symbol
Lims2
Gene description
LIM zinc finger domain containing 2
See related
Ensembl:ENSMMMG00000020647
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000037.1 (22204310..22240923, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351215.1 (22204308..22228181, complement)

NW_026000037.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 13-like Neighboring gene myosin VIIB Neighboring gene uncharacterized LOC125619368 Neighboring gene G protein-coupled receptor 17 Neighboring gene uncharacterized LOC125619369 Neighboring gene SFT2 domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and senescent cell antigen-like-containing domain protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000037.1 Reference marMar

    Range
    22204310..22240923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048812149.1 → XP_048668106.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X6

    UniProtKB/TrEMBL
    A0AAJ8DFU1

  2. XM_048812151.1 → XP_048668108.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C6A3H5

  3. XM_048812148.1 → XP_048668105.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X5

    UniProtKB/TrEMBL
    A0AAJ8DFS2

  4. XM_048812147.1 → XP_048668104.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X4

    UniProtKB/TrEMBL
    A0AAJ8DFG1

  5. XM_015479092.2 → XP_015334578.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X3

    UniProtKB/TrEMBL
    A0AAJ7AAG0
    Conserved Domains (5) summary
    cd09331
    Location:40 → 98
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:101 → 152
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:165 → 215
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:221 → 274
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:282 → 335
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  6. XM_048812146.1 → XP_048668103.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X1

    UniProtKB/TrEMBL
    A0AAJ8AN28

  7. XM_015479091.2 → XP_015334577.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C6A3H5
    Related
    ENSMMMP00000023584.1
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  8. XM_048812150.1 → XP_048668107.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X6

    UniProtKB/TrEMBL
    A0AAJ8DFU1
Nucleotide Protein
Heading Accession and Version

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