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Lime1 Lck interacting transmembrane adaptor 1 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107136005, updated on 1-Aug-2024

Summary

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Gene symbol
Lime1
Gene description
Lck interacting transmembrane adaptor 1
See related
Ensembl:ENSMMMG00000001114
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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See Lime1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000026.1 (598438..601672, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351210.1 (598426..601573, complement)

NW_026000026.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 46 Neighboring gene SLC2A4 regulator Neighboring gene 40S ribosomal protein S29 Neighboring gene zinc finger CCCH-type and G-patch domain containing Neighboring gene ADP ribosylation factor related protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in B cell receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in T cell receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of MAP kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of release of sequestered calcium ion into cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of B cell receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lck-interacting transmembrane adapter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000026.1 Reference marMar

    Range
    598438..601672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048810614.1 → XP_048666571.1  lck-interacting transmembrane adapter 1 isoform X4

    UniProtKB/TrEMBL
    A0AAJ8AL86

  2. XM_015478260.2 → XP_015333746.1  lck-interacting transmembrane adapter 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C5YMA0, A0AAJ8AKC5
    Related
    ENSMMMP00000001188.1
    Conserved Domains (1) summary
    pfam15332
    Location:27 → 258
    LIME1; Lck-interacting transmembrane adapter 1

  3. XM_048810615.1 → XP_048666572.1  lck-interacting transmembrane adapter 1 isoform X5

    UniProtKB/TrEMBL
    A0AAJ8AL98

  4. XM_048810621.1 → XP_048666578.1  lck-interacting transmembrane adapter 1 isoform X7

    UniProtKB/TrEMBL
    A0AAJ8DEC6

  5. XM_048810618.1 → XP_048666575.1  lck-interacting transmembrane adapter 1 isoform X6

    UniProtKB/TrEMBL
    A0AAJ8DE00

  6. XM_048810620.1 → XP_048666577.1  lck-interacting transmembrane adapter 1 isoform X7

    UniProtKB/TrEMBL
    A0AAJ8DEC6

  7. XM_048810617.1 → XP_048666574.1  lck-interacting transmembrane adapter 1 isoform X6

    UniProtKB/TrEMBL
    A0AAJ8DE00

  8. XM_048810612.1 → XP_048666569.1  lck-interacting transmembrane adapter 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C5YMA0, A0AAJ8AKC5

  9. XM_048810611.1 → XP_048666568.1  lck-interacting transmembrane adapter 1 isoform X1

    UniProtKB/TrEMBL
    A0AAJ8AJF2

  10. XM_048810619.1 → XP_048666576.1  lck-interacting transmembrane adapter 1 isoform X7

    UniProtKB/TrEMBL
    A0AAJ8DEC6

  11. XM_048810616.1 → XP_048666573.1  lck-interacting transmembrane adapter 1 isoform X6

    UniProtKB/TrEMBL
    A0AAJ8DE00

  12. XM_048810613.1 → XP_048666570.1  lck-interacting transmembrane adapter 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C5YMA0, A0AAJ8AK19

  13. XM_015478258.2 → XP_015333744.1  lck-interacting transmembrane adapter 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C5YMA0, A0AAJ8AKC5
    Conserved Domains (1) summary
    pfam15332
    Location:27 → 258
    LIME1; Lck-interacting transmembrane adapter 1
Nucleotide Protein
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