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SLC8A3 solute carrier family 8 member A3 [ Gekko japonicus ]

Gene ID: 107107692, updated on 14-Mar-2024

Summary

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Gene symbol
SLC8A3
Gene description
solute carrier family 8 member A3
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
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Genomic context

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See SLC8A3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015164181.1 (280167..524578, complement)

NW_015164181.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 10 member 1 Neighboring gene SPARC related modular calcium binding 1 Neighboring gene sarcoplasmic/endoplasmic reticulum calcium ATPase 3 Neighboring gene purinergic receptor P2X 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015164181.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium:sodium antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/calcium exchanger 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015164181.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    280167..524578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015407999.1 → XP_015263485.1  sodium/calcium exchanger 3 isoform X4

    Conserved Domains (4) summary
    TIGR00845
    Location:1 → 920
    caca; sodium/calcium exchanger 1
    pfam01699
    Location:747 → 911
    Na_Ca_ex; Sodium/calcium exchanger protein
    pfam03160
    Location:394 → 484
    Calx-beta; Calx-beta domain
    pfam16494
    Location:252 → 373
    Na_Ca_ex_C; C-terminal extension of sodium/calcium exchanger domain

  2. XM_015407997.1 → XP_015263483.1  sodium/calcium exchanger 3 isoform X2

    Conserved Domains (4) summary
    TIGR00845
    Location:1 → 921
    caca; sodium/calcium exchanger 1
    pfam01699
    Location:748 → 912
    Na_Ca_ex; Sodium/calcium exchanger protein
    pfam03160
    Location:394 → 484
    Calx-beta; Calx-beta domain
    pfam16494
    Location:252 → 373
    Na_Ca_ex_C; C-terminal extension of sodium/calcium exchanger domain

  3. XM_015407998.1 → XP_015263484.1  sodium/calcium exchanger 3 isoform X3

    Conserved Domains (4) summary
    TIGR00845
    Location:1 → 921
    caca; sodium/calcium exchanger 1
    pfam01699
    Location:748 → 912
    Na_Ca_ex; Sodium/calcium exchanger protein
    pfam03160
    Location:394 → 484
    Calx-beta; Calx-beta domain
    pfam16494
    Location:252 → 373
    Na_Ca_ex_C; C-terminal extension of sodium/calcium exchanger domain

  4. XM_015407995.1 → XP_015263481.1  sodium/calcium exchanger 3 isoform X1

    Conserved Domains (4) summary
    TIGR00845
    Location:1 → 922
    caca; sodium/calcium exchanger 1
    pfam01699
    Location:749 → 913
    Na_Ca_ex; Sodium/calcium exchanger protein
    pfam03160
    Location:394 → 484
    Calx-beta; Calx-beta domain
    pfam16494
    Location:252 → 373
    Na_Ca_ex_C; C-terminal extension of sodium/calcium exchanger domain

  5. XM_015407996.1 → XP_015263482.1  sodium/calcium exchanger 3 isoform X1

    Conserved Domains (4) summary
    TIGR00845
    Location:1 → 922
    caca; sodium/calcium exchanger 1
    pfam01699
    Location:749 → 913
    Na_Ca_ex; Sodium/calcium exchanger protein
    pfam03160
    Location:394 → 484
    Calx-beta; Calx-beta domain
    pfam16494
    Location:252 → 373
    Na_Ca_ex_C; C-terminal extension of sodium/calcium exchanger domain
Nucleotide Protein
Heading Accession and Version

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