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pds5a PDS5 cohesin associated factor A [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107099098, updated on 14-Mar-2024

Summary

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Gene symbol
pds5a
Gene description
PDS5 cohesin associated factor A
See related
Ensembl:ENSCVAG00000007067
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151290.1 (153021..190280, complement)

NW_015151290.1Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 14 Neighboring gene ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) Neighboring gene NEDD4 binding protein 2 Neighboring gene ras homolog family member H

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151290.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sister chromatid cohesion protein PDS5 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151290.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    153021..190280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015397074.1 → XP_015252560.1  sister chromatid cohesion protein PDS5 homolog A

    UniProtKB/TrEMBL
    A0A3Q2CK11, A0A3Q2GDR8
    Related
    ENSCVAP00000023600.1, ENSCVAT00000006421.1
    Conserved Domains (1) summary
    sd00044
    Location:275 → 305
    HEAT; HEAT repeat [structural motif]

  2. XM_015397076.1 → XP_015252562.1  sister chromatid cohesion protein PDS5 homolog A

    UniProtKB/TrEMBL
    A0A3Q2CK11, A0A3Q2GDR8
    Conserved Domains (1) summary
    sd00044
    Location:275 → 305
    HEAT; HEAT repeat [structural motif]

  3. XM_015397075.1 → XP_015252561.1  sister chromatid cohesion protein PDS5 homolog A

    UniProtKB/TrEMBL
    A0A3Q2CK11, A0A3Q2GDR8
    Related
    ENSCVAP00000005574.1, ENSCVAT00000006456.1
    Conserved Domains (1) summary
    sd00044
    Location:275 → 305
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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