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zbtb42 zinc finger and BTB domain containing 42 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107094378, updated on 14-Mar-2024

Summary

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Gene symbol
zbtb42
Gene description
zinc finger and BTB domain containing 42
See related
Ensembl:ENSCVAG00000013416
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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See zbtb42 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150933.1 (23063..31445, complement)

NW_015150933.1Genomic Context describing neighboring genes Neighboring gene adenylosuccinate synthase 1 Neighboring gene SIVA1, apoptosis-inducing factor Neighboring gene v-akt murine thymoma viral oncogene homolog 1 Neighboring gene centrosomal protein 170Ba

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150933.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150933.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    23063..31445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015389938.1 → XP_015245424.1  zinc finger and BTB domain-containing protein 42

    UniProtKB/TrEMBL
    A0A3Q2CZ58
    Related
    ENSCVAP00000011184.1, ENSCVAT00000018092.1
    Conserved Domains (5) summary
    smart00225
    Location:25 → 121
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:383 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:439 → 459
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:14 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:452 → 474
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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