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ago4 argonaute RISC component 4 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107094264, updated on 14-Mar-2024

Summary

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Gene symbol
ago4
Gene description
argonaute RISC component 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150925.1 (160904..177972)

NW_015150925.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown open reading frame, human C1orf216 Neighboring gene claspin Neighboring gene exostoses (multiple) 1c Neighboring gene Mediator of RNA polymerase II transcription subunit 30-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150925.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein argonaute-4
Names
argonaute 4, RISC catalytic component
argonaute RISC catalytic component 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150925.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    160904..177972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015389788.1 → XP_015245274.1  protein argonaute-4

    Conserved Domains (5) summary
    PLN03202
    Location:17 → 872
    PLN03202; protein argonaute; Provisional
    cd02846
    Location:219 → 339
    PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
    cd04657
    Location:386 → 831
    Piwi_ago-like; Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of ...
    pfam08699
    Location:169 → 218
    ArgoL1; Argonaute linker 1 domain
    pfam16486
    Location:20 → 157
    ArgoN; N-terminal domain of argonaute
Nucleotide Protein
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