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ptbp1 polypyrimidine tract binding protein 1 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107093745, updated on 2-Nov-2023

Summary

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Gene symbol
ptbp1
Gene description
polypyrimidine tract binding protein 1
See related
Ensembl:ENSCVAG00000014539
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150897.1 (232403..249501, complement)

NW_015150897.1Genomic Context describing neighboring genes Neighboring gene synaptosomal-associated protein 23-like Neighboring gene ephrin-A2a Neighboring gene paralemmin 1b Neighboring gene lipid phosphate phosphatase-related protein type 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150897.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150897.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    232403..249501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015388991.1 → XP_015244477.1  polypyrimidine tract-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2D1G8, A0A3Q2GK02
    Related
    ENSCVAP00000027840.1, ENSCVAT00000019273.1
    Conserved Domains (4) summary
    cd12693
    Location:195 → 290
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    cd12695
    Location:384 → 476
    RRM3_PTBP1; RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
    TIGR01649
    Location:71 → 577
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:497 → 577
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_015388992.1 → XP_015244478.1  polypyrimidine tract-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2D1G8
    Conserved Domains (3) summary
    cd12693
    Location:146 → 241
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    TIGR01649
    Location:22 → 528
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:335 → 427
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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