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shroom4 shroom family member 4 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107091519, updated on 14-Mar-2024

Summary

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Gene symbol
shroom4
Gene description
shroom family member 4
See related
Ensembl:ENSCVAG00000012557
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150794.1 (751883..849630)

NW_015150794.1Genomic Context describing neighboring genes Neighboring gene phosphorylase kinase, alpha 1a (muscle) Neighboring gene bone morphogenetic protein 15 Neighboring gene dnaJ homolog subfamily C member 16-like Neighboring gene caspase 9, apoptosis-related cysteine peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150794.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150794.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    751883..849630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015385493.1 → XP_015240979.1  protein Shroom4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2E3G5
    Conserved Domains (2) summary
    cd00992
    Location:11 → 91
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam08687
    Location:1563 → 1762
    ASD2; Apx/Shroom domain ASD2

  2. XM_015385494.1 → XP_015240980.1  protein Shroom4 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2E3G5
    Conserved Domains (2) summary
    cd00992
    Location:11 → 91
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam08687
    Location:1563 → 1762
    ASD2; Apx/Shroom domain ASD2

  3. XM_015385496.1 → XP_015240982.1  protein Shroom4 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2E3E3, A0A3Q2E3G5
    Related
    ENSCVAP00000026753.1, ENSCVAT00000017258.1
    Conserved Domains (1) summary
    pfam08687
    Location:1420 → 1619
    ASD2; Apx/Shroom domain ASD2
Nucleotide Protein
Heading Accession and Version

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