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zic3 zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107089268, updated on 14-Mar-2024

Summary

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Gene symbol
zic3
Gene description
zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila)
See related
Ensembl:ENSCVAG00000008747
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150698.1 (560949..565630, complement)

NW_015150698.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily protein member 5 Neighboring gene G protein-coupled receptor 101 Neighboring gene zic family member 6 Neighboring gene uncharacterized LOC107089269 Neighboring gene fibroblast growth factor 13a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150698.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ZIC 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150698.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    560949..565630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015381954.1 → XP_015237440.1  zinc finger protein ZIC 3

    UniProtKB/TrEMBL
    A0A3Q2GFC3
    Related
    ENSCVAP00000024575.1, ENSCVAT00000003835.1
    Conserved Domains (3) summary
    COG5189
    Location:301 → 385
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:279 → 299
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam18366
    Location:222 → 267
    zf_ZIC; Zic proteins zinc finger domain
Nucleotide Protein
Heading Accession and Version

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