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hells helicase, lymphoid specific [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107088886, updated on 11-Apr-2024

Summary

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Gene symbol
hells
Gene description
helicase, lymphoid specific
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150685.1 (968251..992714)

NW_015150685.1Genomic Context describing neighboring genes Neighboring gene cytosolic carboxypeptidase 1 pseudogene Neighboring gene uncharacterized LOC107088901 Neighboring gene calcium homeostasis modulator 3 Neighboring gene non-SMC condensin II complex, subunit D3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150685.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA methylation-dependent heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lymphocyte proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of gene expression via chromosomal CpG island methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pericentric heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pericentric heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lymphoid-specific helicase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150685.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    968251..992714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015381346.1 → XP_015236832.1  lymphoid-specific helicase

    Conserved Domains (3) summary
    cd00046
    Location:262 → 404
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:245 → 599
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:619 → 679
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
Heading Accession and Version

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