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mmp9 matrix metallopeptidase 9 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107087470, updated on 14-Mar-2024

Summary

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Gene symbol
mmp9
Gene description
matrix metallopeptidase 9
See related
Ensembl:ENSCVAG00000013096
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150638.1 (876231..880810, complement)

NW_015150638.1Genomic Context describing neighboring genes Neighboring gene prokineticin 1 Neighboring gene zinc finger protein 335 Neighboring gene adenosine A1 receptor b Neighboring gene DNA cross-link repair 1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150638.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150638.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    876231..880810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015379056.1 → XP_015234542.1  matrix metalloproteinase-9

    UniProtKB/TrEMBL
    A0A3Q2E4E4
    Related
    ENSCVAP00000027042.1, ENSCVAT00000017701.1
    Conserved Domains (5) summary
    smart00059
    Location:342 → 390
    FN2; Fibronectin type 2 domain
    cd00094
    Location:496 → 683
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    cd04278
    Location:118 → 446
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    pfam00413
    Location:118 → 446
    Peptidase_M10; Matrixin
    pfam01471
    Location:39 → 97
    PG_binding_1; Putative peptidoglycan binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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