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SATB2 SATB homeobox 2 [ Acinonyx jubatus (cheetah) ]

Gene ID: 106980006, updated on 13-Mar-2024

Summary

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Gene symbol
SATB2
Gene description
SATB homeobox 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Acinonyx jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Acinonychinae; Acinonyx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: C1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_04 current VMU_Ajub_asm_v1.0 (GCF_027475565.1) C1 NC_069381.1 (182229220..182421450, complement)

Chromosome C1 - NC_069381.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113598396 Neighboring gene 40S ribosomal protein S15a-like Neighboring gene uncharacterized LOC113597531 Neighboring gene chromosome C1 C2orf69 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069381.1 Chromosome C1 Reference VMU_Ajub_asm_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SATB2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027475565.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VMU_Ajub_asm_v1.0

Genomic

  1. NC_069381.1 Reference VMU_Ajub_asm_v1.0

    Range
    182229220..182421450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053215516.1 → XP_053071491.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A6J1YX25

  2. XM_053215518.1 → XP_053071493.1  DNA-binding protein SATB2 isoform X2

  3. XM_053215515.1 → XP_053071490.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A6J1YX25

  4. XM_053215519.1 → XP_053071494.1  DNA-binding protein SATB2 isoform X2

  5. XM_053215514.1 → XP_053071489.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A6J1YX25

  6. XM_027053910.2 → XP_026909711.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A6J1YX25
    Conserved Domains (4) summary
    smart00389
    Location:614 → 671
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:477 → 556
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB

  7. XM_027053904.2 → XP_026909705.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A6J1YX25
    Conserved Domains (4) summary
    smart00389
    Location:614 → 671
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:477 → 556
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB

  8. XM_053215517.1 → XP_053071492.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A6J1YX25
Nucleotide Protein
Heading Accession and Version

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