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spidr scaffold protein involved in DNA repair [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106951433, updated on 13-Mar-2024

Summary

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Gene symbol
spidr
Gene description
scaffold protein involved in DNA repair
See related
Ensembl:ENSPLAG00000009809
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See spidr in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112643.1 (411425..461781, complement)

NW_015112643.1Genomic Context describing neighboring genes Neighboring gene minichromosome maintenance complex component 4 Neighboring gene CCAAT enhancer binding protein delta Neighboring gene microtubule-associated protein, RP/EB family, member 2 Neighboring gene dystrobrevin, alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112643.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of establishment of protein localization to chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair-scaffolding protein
Names
scaffolding protein involved in DNA repair

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112643.1 Reference P_latipinna-1.0

    Range
    411425..461781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015038979.1 → XP_014894465.1  DNA repair-scaffolding protein isoform X1

    Conserved Domains (2) summary
    pfam14950
    Location:5 → 383
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:531 → 947
    DUF4503; Domain of unknown function (DUF4503)

  2. XM_015038987.1 → XP_014894473.1  DNA repair-scaffolding protein isoform X2

    UniProtKB/TrEMBL
    A0A3B3U208
    Related
    ENSPLAP00000007475.1, ENSPLAT00000004514.1
    Conserved Domains (2) summary
    pfam14950
    Location:5 → 383
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:531 → 931
    DUF4503; Domain of unknown function (DUF4503)

  3. XM_015038994.1 → XP_014894480.1  DNA repair-scaffolding protein isoform X3

    Conserved Domains (2) summary
    pfam14950
    Location:1 → 192
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:340 → 756
    DUF4503; Domain of unknown function (DUF4503)
Nucleotide Protein
Heading Accession and Version

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