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LOC106946317 aryl hydrocarbon receptor nuclear translocator-like protein 2 [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106946317, updated on 2-Nov-2023

Summary

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Gene symbol
LOC106946317
Gene description
aryl hydrocarbon receptor nuclear translocator-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112802.1 (143419..159820)

NW_015112802.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 21 Neighboring gene serine/threonine kinase 38 like Neighboring gene uncharacterized LOC106946321 Neighboring gene uncharacterized LOC106946320 Neighboring gene solute carrier family 13 member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112802.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aryl hydrocarbon receptor nuclear translocator-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112802.1 Reference P_latipinna-1.0

    Range
    143419..159820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015030555.1 → XP_014886041.1  aryl hydrocarbon receptor nuclear translocator-like protein 2

    UniProtKB/TrEMBL
    A0A3B3VIL0
    Conserved Domains (4) summary
    smart00091
    Location:204 → 267
    PAS; PAS domain
    cd00083
    Location:132 → 185
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:393 → 496
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:395 → 509
    PAS_11; PAS domain
Nucleotide Protein
Heading Accession and Version

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