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tsen2 TSEN2 tRNA splicing endonuclease subunit [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106937050, updated on 13-Mar-2024

Summary

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Gene symbol
tsen2
Gene description
TSEN2 tRNA splicing endonuclease subunit
See related
Ensembl:ENSPLAG00000013787
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See tsen2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015114882.1 (181436..189237, complement)

NW_015114882.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase [acetyl-transferring]-phosphatase 1, mitochondrial-like Neighboring gene RNA-binding protein 39-like Neighboring gene MKRN2 opposite strand Neighboring gene collectin-12-like Neighboring gene makorin, ring finger protein, 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015114882.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA-intron endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA-type intron splice site recognition and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of tRNA-intron endonuclease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA-splicing endonuclease subunit Sen2
Names
tRNA splicing endonuclease subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015114882.1 Reference P_latipinna-1.0

    Range
    181436..189237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015018361.1 → XP_014873847.1  tRNA-splicing endonuclease subunit Sen2

    UniProtKB/TrEMBL
    A0A3B3VMF7
    Related
    ENSPLAP00000026193.1, ENSPLAT00000017986.1
    Conserved Domains (3) summary
    COG1676
    Location:205 → 348
    SEN2; tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
    pfam01974
    Location:262 → 348
    tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain
    pfam02778
    Location:218 → 252
    tRNA_int_endo_N; tRNA intron endonuclease, N-terminal domain
Nucleotide Protein
Heading Accession and Version

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