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mbd5 methyl-CpG binding domain protein 5 [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106936380, updated on 2-Nov-2023

Summary

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Gene symbol
mbd5
Gene description
methyl-CpG binding domain protein 5
See related
Ensembl:ENSPLAG00000014473
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015114744.1 (19059..46891, complement)

NW_015114744.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106936382 Neighboring gene kinesin family member 5C Neighboring gene origin recognition complex, subunit 4 Neighboring gene activin A receptor type 2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015114744.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromocenter IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methyl-CpG-binding domain protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015114744.1 Reference P_latipinna-1.0

    Range
    19059..46891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015017339.1 → XP_014872825.1  methyl-CpG-binding domain protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A3B3UFJ4
    Related
    ENSPLAP00000011376.1, ENSPLAT00000018775.1
    Conserved Domains (1) summary
    cl02554
    Location:1302 → 1378
    PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...

  2. XM_015017340.1 → XP_014872826.1  methyl-CpG-binding domain protein 5 isoform X2

    Conserved Domains (1) summary
    cl02554
    Location:1301 → 1377
    PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...

  3. XM_015017336.1 → XP_014872822.1  methyl-CpG-binding domain protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A3B3UFJ4
    Conserved Domains (1) summary
    cl02554
    Location:1302 → 1378
    PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...

  4. XM_015017337.1 → XP_014872823.1  methyl-CpG-binding domain protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A3B3UFJ4
    Related
    ENSPLAP00000011382.1, ENSPLAT00000018758.1
    Conserved Domains (1) summary
    cl02554
    Location:1302 → 1378
    PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
Nucleotide Protein
Heading Accession and Version

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