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nyx nyctalopin [ Poecilia mexicana ]

Gene ID: 106929371, updated on 13-Mar-2024

Summary

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Gene symbol
nyx
Gene description
nyctalopin
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015095629.1 (180283..186311, complement)

NW_015095629.1Genomic Context describing neighboring genes Neighboring gene peripheral plasma membrane protein CASK Neighboring gene G protein-coupled receptor 82 Neighboring gene G protein-coupled receptor 34 Neighboring gene DEAD-box helicase 3 X-linked a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015095629.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nyctalopin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015095629.1 Reference P_mexicana-1.0

    Range
    180283..186311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015006271.1 → XP_014861757.1  nyctalopin

    UniProtKB/TrEMBL
    A0A3B3YN14
    Conserved Domains (5) summary
    smart00013
    Location:27 → 57
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:332 → 366
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:168 → 316
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:64 → 83
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:82 → 143
    LRR_8; Leucine rich repeat

  2. XM_015006273.1 → XP_014861759.1  nyctalopin

    UniProtKB/TrEMBL
    A0A3B3YN14
    Conserved Domains (5) summary
    smart00013
    Location:27 → 57
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:332 → 366
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:168 → 316
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:64 → 83
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:82 → 143
    LRR_8; Leucine rich repeat
Nucleotide Protein
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