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LOC106924084 protocadherin 8 [ Poecilia mexicana ]

Gene ID: 106924084, updated on 2-Nov-2023

Summary

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Gene symbol
LOC106924084
Gene description
protocadherin 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
pcdh8
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015095181.1 (377576..381765)

NW_015095181.1Genomic Context describing neighboring genes Neighboring gene SH2 domain-containing protein 1A-like Neighboring gene chromosome unknown open reading frame, human CXorf38 Neighboring gene uncharacterized LOC106924083 Neighboring gene chondromodulin Neighboring gene SGT1 homolog, MIS12 kinetochore complex assembly cochaperone

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015095181.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015095181.1 Reference P_mexicana-1.0

    Range
    377576..381765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014997606.1 → XP_014853092.1  protocadherin-8

    UniProtKB/TrEMBL
    A0A3B3XAM7
    Conserved Domains (2) summary
    cd11304
    Location:467 → 569
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:35 → 109
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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