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sprtn SprT-like N-terminal domain [ Poecilia mexicana ]

Gene ID: 106923287, updated on 13-Mar-2024

Summary

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Gene symbol
sprtn
Gene description
SprT-like N-terminal domain
See related
Ensembl:ENSPMEG00000019442
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015095122.1 (150323..155121, complement)

NW_015095122.1Genomic Context describing neighboring genes Neighboring gene ARV1 homolog, fatty acid homeostasis modulator Neighboring gene family with sequence similarity 89 member A Neighboring gene exocyst complex component 8 Neighboring gene tripartite motif containing 67

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015095122.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sprT-like domain-containing protein Spartan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015095122.1 Reference P_mexicana-1.0

    Range
    150323..155121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014996243.1 → XP_014851729.1  sprT-like domain-containing protein Spartan

    UniProtKB/TrEMBL
    A0A3B3XP32, A0A3B3XP41
    Related
    ENSPMEP00000016733.1, ENSPMET00000025396.1
    Conserved Domains (2) summary
    smart00734
    Location:523 → 546
    ZnF_Rad18; Rad18-like CCHC zinc finger
    pfam10263
    Location:83 → 251
    SprT-like; SprT-like family
Nucleotide Protein
Heading Accession and Version

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