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sox8a SRY-box transcription factor 8a [ Poecilia mexicana ]

Gene ID: 106915758, updated on 13-Mar-2024

Summary

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Gene symbol
sox8a
Gene description
SRY-box transcription factor 8a
See related
Ensembl:ENSPMEG00000008693
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
sox8
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094684.1 (58806..61475, complement)

NW_015094684.1Genomic Context describing neighboring genes Neighboring gene dexamethasone-induced Ras-related protein 1-like Neighboring gene mediator complex subunit 9 Neighboring gene RAB26, member RAS oncogene family Neighboring gene arf-GAP with dual PH domain-containing protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015094684.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in morphogenesis of an epithelium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-8
Names
SRY-box 8
SRY-box transcription factor 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015094684.1 Reference P_mexicana-1.0

    Range
    58806..61475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014983579.1 → XP_014839065.1  transcription factor SOX-8

    UniProtKB/TrEMBL
    A0A3B3WWQ6
    Related
    ENSPMEP00000007084.1, ENSPMET00000004716.1
    Conserved Domains (2) summary
    cd01388
    Location:99 → 169
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam12444
    Location:22 → 89
    Sox_N; Sox developmental protein N terminal
Nucleotide Protein
Heading Accession and Version

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