U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sema5a sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A [ Poecilia mexicana ]

Gene ID: 106915712, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sema5a
Gene description
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
See related
Ensembl:ENSPMEG00000010238
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sema5a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094682.1 (374..157147)

NW_015094682.1Genomic Context describing neighboring genes Neighboring gene 5-methyltetrahydrofolate-homocysteine methyltransferase reductase Neighboring gene chaperonin containing TCP1, subunit 5 (epsilon)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015094682.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
semaphorin-5A
Names
semaphorin 5A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015094682.1 Reference P_mexicana-1.0

    Range
    374..157147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014983489.1 → XP_014838975.1  semaphorin-5A isoform X2

    UniProtKB/TrEMBL
    A0A3B3YH12
    Conserved Domains (3) summary
    smart00209
    Location:606 → 659
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:494 → 541
    PSI; Plexin repeat
    cl15693
    Location:58 → 493
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_014983488.1 → XP_014838974.1  semaphorin-5A isoform X1

    UniProtKB/TrEMBL
    A0A3B3X0E3, A0A3B3YH12
    Related
    ENSPMEP00000008419.1, ENSPMET00000002488.1
    Conserved Domains (3) summary
    smart00209
    Location:606 → 659
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:494 → 541
    PSI; Plexin repeat
    cl15693
    Location:58 → 493
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

RNA

  1. XR_001417846.1 RNA Sequence

  2. XR_001417845.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.