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znf280d zinc finger protein 280D [ Poecilia mexicana ]

Gene ID: 106913996, updated on 13-Mar-2024

Summary

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Gene symbol
znf280d
Gene description
zinc finger protein 280D
See related
Ensembl:ENSPMEG00000022015
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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See znf280d in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094615.1 (297317..316294, complement)

NW_015094615.1Genomic Context describing neighboring genes Neighboring gene testis-expressed sequence 9 protein-like Neighboring gene testis-expressed sequence 9 protein-like Neighboring gene transcription factor 12 Neighboring gene cingulin-like 1 Neighboring gene myocardial zonula adherens protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015094615.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 280D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015094615.1 Reference P_mexicana-1.0

    Range
    297317..316294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014980478.1 → XP_014835964.1  zinc finger protein 280D isoform X1

    UniProtKB/TrEMBL
    A0A3B3Z2M4
    Conserved Domains (2) summary
    smart00980
    Location:4 → 92
    THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
    sd00017
    Location:477 → 498
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_014980481.1 → XP_014835967.1  zinc finger protein 280D isoform X4

    UniProtKB/TrEMBL
    A0A3B3Z247, A0A3B3Z2M4
    Related
    ENSPMEP00000033488.1, ENSPMET00000028366.1
    Conserved Domains (1) summary
    sd00017
    Location:356 → 377
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_014980479.1 → XP_014835965.1  zinc finger protein 280D isoform X2

    UniProtKB/TrEMBL
    A0A3B3Z2M4
    Conserved Domains (2) summary
    sd00017
    Location:368 → 389
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam07223
    Location:62 → 218
    DUF1421; Protein of unknown function (DUF1421)

  4. XM_014980480.1 → XP_014835966.1  zinc finger protein 280D isoform X3

    UniProtKB/TrEMBL
    A0A3B3Z2M4
    Conserved Domains (2) summary
    smart00980
    Location:4 → 92
    THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
    sd00017
    Location:477 → 498
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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