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ranbp2 RAN binding protein 2 [ Poecilia mexicana ]

Gene ID: 106908820, updated on 13-Mar-2024

Summary

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Gene symbol
ranbp2
Gene description
RAN binding protein 2
See related
Ensembl:ENSPMEG00000005561
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015097458.1 (27168..56657)

NW_015097458.1Genomic Context describing neighboring genes Neighboring gene LIM and senescent cell antigen-like-containing domain protein 1 Neighboring gene uncharacterized LOC106908822 Neighboring gene translationally-controlled tumor protein homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015097458.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NLS-bearing protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 SUMO-protein ligase RanBP2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015097458.1 Reference P_mexicana-1.0

    Range
    27168..56657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014975042.1 → XP_014830528.1  E3 SUMO-protein ligase RanBP2 isoform X1

    Conserved Domains (12) summary
    cd13177
    Location:1899 → 2015
    RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
    cd13178
    Location:2786 → 2902
    RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
    cd14684
    Location:1197 → 1313
    RanBD1_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 1
    sd00025
    Location:1348 → 1367
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00006
    Location:59 → 89
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:60 → 91
    TPR_1; Tetratricopeptide repeat
    pfam00641
    Location:1516 → 1544
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam12185
    Location:2561 → 2620
    IR1-M; Nup358/RanBP2 E3 ligase domain
    pfam13414
    Location:59 → 126
    TPR_11; TPR repeat
    pfam13634
    Location:1383 → 1452
    Nucleoporin_FG; Nucleoporin FG repeat region
    cl00197
    Location:2927 → 3085
    cyclophilin; cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the ...
    cl17171
    Location:2195 → 2312
    PH-like; Pleckstrin homology-like domain

  2. XM_014975043.1 → XP_014830529.1  E3 SUMO-protein ligase RanBP2 isoform X2

    UniProtKB/TrEMBL
    A0A3B3WNE6
    Related
    ENSPMEP00000004336.1, ENSPMET00000009366.1
    Conserved Domains (12) summary
    cd13177
    Location:1899 → 2015
    RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
    cd13178
    Location:2760 → 2876
    RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
    cd14684
    Location:1197 → 1313
    RanBD1_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 1
    sd00025
    Location:1348 → 1367
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00006
    Location:59 → 89
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:60 → 91
    TPR_1; Tetratricopeptide repeat
    pfam00641
    Location:1516 → 1544
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam12185
    Location:2535 → 2594
    IR1-M; Nup358/RanBP2 E3 ligase domain
    pfam13414
    Location:59 → 126
    TPR_11; TPR repeat
    pfam13634
    Location:1383 → 1452
    Nucleoporin_FG; Nucleoporin FG repeat region
    cl00197
    Location:2901 → 3059
    cyclophilin; cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the ...
    cl17171
    Location:2195 → 2312
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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