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sntb2 syntrophin, beta 2 [ Poecilia mexicana ]

Gene ID: 106908258, updated on 13-Mar-2024

Summary

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Gene symbol
sntb2
Gene description
syntrophin, beta 2
See related
Ensembl:ENSPMEG00000004351
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015097292.1 (25270..50608, complement)

NW_015097292.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 4A Neighboring gene uncharacterized LOC106908260 Neighboring gene protein spire homolog 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015097292.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of dystrophin-associated glycoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-2-syntrophin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015097292.1 Reference P_mexicana-1.0

    Range
    25270..50608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014974311.1 → XP_014829797.1  beta-2-syntrophin

    UniProtKB/TrEMBL
    A0A3B3WK76, A0A3B3WK93
    Related
    ENSPMEP00000003223.1, ENSPMET00000011214.1
    Conserved Domains (5) summary
    smart00233
    Location:377 → 488
    PH; Pleckstrin homology domain
    cd00992
    Location:161 → 243
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd01258
    Location:295 → 352
    PHsplit_syntrophin; Syntrophin Split Pleckstrin homology (PH) domain
    pfam00169
    Location:377 → 488
    PH; PH domain
    cl17171
    Location:8 → 38
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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