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alkbh3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase [ Poecilia mexicana ]

Gene ID: 106904444, updated on 11-Apr-2024

Summary

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Gene symbol
alkbh3
Gene description
alkB homolog 3, alpha-ketoglutarate dependent dioxygenase
See related
Ensembl:ENSPMEG00000004476
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015096472.1 (77741..88830)

NW_015096472.1Genomic Context describing neighboring genes Neighboring gene hydroxysteroid (17-beta) dehydrogenase 12a Neighboring gene chromosome unknown C11orf96 homolog Neighboring gene TopBP1-interacting, checkpoint, and replication regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015096472.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 3
Names
alkB homolog 3, alpha-ketoglutaratedependent dioxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015096472.1 Reference P_mexicana-1.0

    Range
    77741..88830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014968786.1 → XP_014824272.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3

    UniProtKB/TrEMBL
    A0A3B3WKN8
    Related
    ENSPMEP00000003360.1, ENSPMET00000010992.1
    Conserved Domains (1) summary
    pfam13532
    Location:91 → 276
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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