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ISM1 isthmin 1 [ Calidris pugnax (ruff) ]

Gene ID: 106902660, updated on 3-Aug-2024

Summary

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Gene symbol
ISM1
Gene description
isthmin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090786.1 (8294507..8339849)

NW_015090786.1Genomic Context describing neighboring genes Neighboring gene BTB domain containing 3 Neighboring gene serine palmitoyltransferase long chain base subunit 3 Neighboring gene taspase 1 Neighboring gene ESF1 nucleolar pre-rRNA processing protein homolog Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090786.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isthmin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090786.1 Reference ASM143184v1

    Range
    8294507..8339849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014966325.1 → XP_014821811.1  isthmin-1

    Conserved Domains (2) summary
    smart00723
    Location:345 → 508
    AMOP; Adhesion-associated domain present in MUC4 and other proteins
    smart00209
    Location:277 → 318
    TSP1; Thrombospondin type 1 repeats
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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