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NSMCE2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase [ Calidris pugnax (ruff) ]

Gene ID: 106902197, updated on 3-Aug-2024

Summary

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Gene symbol
NSMCE2
Gene description
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase
See related
Ensembl:ENSCPUG00000008771
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See NSMCE2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015094509.1 (20431920..20559555)

NW_015094509.1Genomic Context describing neighboring genes Neighboring gene squalene epoxidase Neighboring gene WASH complex subunit 5 Neighboring gene tribbles pseudokinase 1 Neighboring gene LRAT domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015094509.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SUMO ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein sumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Smc5-Smc6 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 SUMO-protein ligase NSE2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015094509.1 Reference ASM143184v1

    Range
    20431920..20559555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014965483.1 → XP_014820969.1  E3 SUMO-protein ligase NSE2

    Related
    ENSCPUP00000012389.1, ENSCPUT00000014740.1
    Conserved Domains (1) summary
    pfam11789
    Location:148 → 208
    zf-Nse; Zinc-finger of the MIZ type in Nse subunit

  2. XM_014965484.1 → XP_014820970.1  E3 SUMO-protein ligase NSE2

    Conserved Domains (1) summary
    pfam11789
    Location:148 → 208
    zf-Nse; Zinc-finger of the MIZ type in Nse subunit
Nucleotide Protein
Heading Accession and Version

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