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HMG20B high mobility group 20B [ Calidris pugnax (ruff) ]

Gene ID: 106892092, updated on 13-Mar-2024

Summary

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Gene symbol
HMG20B
Gene description
high mobility group 20B
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090905.1 (484112..494478)

NW_015090905.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106892090 Neighboring gene major facilitator superfamily domain containing 12 Neighboring gene GIPC PDZ domain containing family member 3 Neighboring gene thromboxane A2 receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090905.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090905.1 Reference ASM143184v1

    Range
    484112..494478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014949004.1 → XP_014804490.1  LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

    Conserved Domains (2) summary
    cd01390
    Location:172 → 237
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    cl21524
    Location:296 → 343
    PRK13923; putative spore coat protein regulator protein YlbO; Provisional
Nucleotide Protein
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