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PBX1 PBX homeobox 1 [ Calidris pugnax (ruff) ]

Gene ID: 106888924, updated on 3-Aug-2024

Summary

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Gene symbol
PBX1
Gene description
PBX homeobox 1
See related
Ensembl:ENSCPUG00000019981
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090852.1 (2968498..3156409)

NW_015090852.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106888875 Neighboring gene uncharacterized LOC106888874 Neighboring gene LIM homeobox transcription factor 1-alpha-like Neighboring gene LIM homeobox transcription factor 1-alpha-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090852.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-B-cell leukemia transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090852.1 Reference ASM143184v1

    Range
    2968498..3156409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014943483.1 → XP_014798969.1  pre-B-cell leukemia transcription factor 1 isoform X4

    Related
    ENSCPUP00000029842.1, ENSCPUT00000035109.1
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  2. XM_014943482.1 → XP_014798968.1  pre-B-cell leukemia transcription factor 1 isoform X3

    Related
    ENSCPUP00000029844.1, ENSCPUT00000035111.1
    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  3. XM_014943479.1 → XP_014798965.1  pre-B-cell leukemia transcription factor 1 isoform X1

    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain

  4. XM_014943480.1 → XP_014798966.1  pre-B-cell leukemia transcription factor 1 isoform X2

    Conserved Domains (2) summary
    cd00086
    Location:234 → 294
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03792
    Location:40 → 232
    PBC; PBC domain
Nucleotide Protein
Heading Accession and Version

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