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PLD1 phospholipase D1 [ Calidris pugnax (ruff) ]

Gene ID: 106886138, updated on 3-Aug-2024

Summary

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Gene symbol
PLD1
Gene description
phospholipase D1
See related
Ensembl:ENSCPUG00000011170
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See PLD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090811.1 (2414085..2497143, complement)

NW_015090811.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 2 Neighboring gene TRAF2 and NCK interacting kinase Neighboring gene uncharacterized LOC106886116 Neighboring gene transmembrane protein 212

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090811.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell motility IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of microvillus assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipase D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090811.1 Reference ASM143184v1

    Range
    2414085..2497143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014938832.1 → XP_014794318.1  phospholipase D1

    Related
    ENSCPUP00000016122.1, ENSCPUT00000019102.1
    Conserved Domains (5) summary
    cd07296
    Location:76 → 208
    PX_PLD1; The phosphoinositide binding Phox Homology domain of Phospholipase D1
    cd09842
    Location:351 → 501
    PLDc_vPLD1_1; Catalytic domain, repeat 1, of vertebrate phospholipase D1
    cd09844
    Location:756 → 937
    PLDc_vPLD1_2; Catalytic domain, repeat 2, of vertebrate phospholipase D1
    PLN02866
    Location:80 → 1060
    PLN02866; phospholipase D
    cd01254
    Location:196 → 325
    PH_PLD; Phospholipase D pleckstrin homology (PH) domain
Nucleotide Protein
Heading Accession and Version

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