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DSG2 desmoglein 2 [ Calidris pugnax (ruff) ]

Gene ID: 106885114, updated on 3-Aug-2024

Summary

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Gene symbol
DSG2
Gene description
desmoglein 2
See related
Ensembl:ENSCPUG00000018988
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090797.1 (3102079..3126572)

NW_015090797.1Genomic Context describing neighboring genes Neighboring gene desmocollin 1 Neighboring gene desmoglein-1-gamma-like Neighboring gene transthyretin Neighboring gene transthyretin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090797.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in desmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
desmoglein-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090797.1 Reference ASM143184v1

    Range
    3102079..3126572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014937025.1 → XP_014792511.1  desmoglein-2

    Related
    ENSCPUP00000028193.1, ENSCPUT00000033199.1
    Conserved Domains (2) summary
    cd11304
    Location:162 → 264
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:84 → 156
    CA; Cadherin repeats
Nucleotide Protein
Heading Accession and Version

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