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PCDH9 protocadherin 9 [ Sturnus vulgaris (Common starling) ]

Gene ID: 106865338, updated on 3-Aug-2024

Summary

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Gene symbol
PCDH9
Gene description
protocadherin 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnus vulgaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sturnidae; Sturnus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Sturnus_vulgaris-1.0 (GCF_001447265.1) Unplaced Scaffold NW_014650479.1 (1433251..2099242)

NW_014650479.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106865337 Neighboring gene kelch like family member 1 Neighboring gene uncharacterized LOC106865331 Neighboring gene uncharacterized LOC106865332 Neighboring gene uncharacterized LOC106865334

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014650479.1 Unplaced Scaffold Reference Sturnus_vulgaris-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnus vulgaris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sturnus_vulgaris-1.0

Genomic

  1. NW_014650479.1 Reference Sturnus_vulgaris-1.0

    Range
    1433251..2099242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014895356.1 → XP_014750842.1  protocadherin-9 isoform X1

    Conserved Domains (2) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 1000
    Protocadherin

  2. XM_014895357.1 → XP_014750843.1  protocadherin-9 isoform X2

    Conserved Domains (3) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:28 → 117
    Cadherin_2; Cadherin-like
    pfam08374
    Location:777 → 1000
    Protocadherin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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