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IFT172 intraflagellar transport 172 [ Sturnus vulgaris (Common starling) ]

Gene ID: 106860399, updated on 3-Aug-2024

Summary

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Gene symbol
IFT172
Gene description
intraflagellar transport 172
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnus vulgaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sturnidae; Sturnus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
47
Annotation release Status Assembly Chr Location
100 current Sturnus_vulgaris-1.0 (GCF_001447265.1) Unplaced Scaffold NW_014650716.1 (72097..108892)

NW_014650716.1Genomic Context describing neighboring genes Neighboring gene fibronectin type III domain containing 4 Neighboring gene low density lipoprotein receptor adapter protein 1-like Neighboring gene keratinocyte associated protein 3 Neighboring gene nuclear receptor binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014650716.1 Unplaced Scaffold Reference Sturnus_vulgaris-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 172 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnus vulgaris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sturnus_vulgaris-1.0

Genomic

  1. NW_014650716.1 Reference Sturnus_vulgaris-1.0

    Range
    72097..108892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014888209.1 → XP_014743695.1  intraflagellar transport protein 172 homolog

    Conserved Domains (6) summary
    COG2319
    Location:17 → 293
    WD40; WD40 repeat [General function prediction only]
    COG3071
    Location:581 → 814
    HemY; Uncharacterized conserved protein HemY, contains two TPR repeats [Function unknown]
    cd15832
    Location:791 → 845
    SNAP; TPR repeat [structural motif]
    sd00039
    Location:2 → 43
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:47 → 293
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl24038
    Location:791 → 976
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein
Heading Accession and Version

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