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EXOSC9 exosome component 9 [ Sturnus vulgaris (Common starling) ]

Gene ID: 106859435, updated on 3-Aug-2024

Summary

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Gene symbol
EXOSC9
Gene description
exosome component 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnus vulgaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sturnidae; Sturnus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Sturnus_vulgaris-1.0 (GCF_001447265.1) Unplaced Scaffold NW_014650683.1 (684336..689016, complement)

NW_014650683.1Genomic Context describing neighboring genes Neighboring gene Bardet-Biedl syndrome 7 Neighboring gene cyclin A2 Neighboring gene annexin A5 Neighboring gene pyroglutamylated RFamide peptide receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014650683.1 Unplaced Scaffold Reference Sturnus_vulgaris-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnus vulgaris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sturnus_vulgaris-1.0

Genomic

  1. NW_014650683.1 Reference Sturnus_vulgaris-1.0

    Range
    684336..689016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014886672.1 → XP_014742158.1  exosome complex component RRP45

    Conserved Domains (2) summary
    cd11368
    Location:6 → 264
    RNase_PH_RRP45; RRP45 subunit of eukaryotic exosome
    COG2123
    Location:10 → 271
    Rrp42; Exosome complex RNA-binding protein Rrp42, RNase PH superfamily [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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