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SOX11 SRY-box transcription factor 11 [ Equus asinus (ass) ]

Gene ID: 106847432, updated on 13-Mar-2024

Summary

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Gene symbol
SOX11
Gene description
SRY-box transcription factor 11
See related
Ensembl:ENSEASG00005035871
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SOX11 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 6 NC_052182.1 (4659434..4662338)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638369.1 (10322597..10326408, complement)

Chromosome 6 - NC_052182.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123286251 Neighboring gene uncharacterized LOC123286252 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC123286436

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: transcription factor SOX-11
Names
SRY-box 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052182.1 Reference ASM1607732v2

    Range
    4659434..4662338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014866708.2 → XP_014722194.2  LOW QUALITY PROTEIN: transcription factor SOX-11

    Related
    ENSEASP00005044255.1, ENSEAST00005049331.1
    Conserved Domains (1) summary
    cd01388
    Location:48 → 119
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
Nucleotide Protein
Heading Accession and Version

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