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COL4A5 collagen type IV alpha 5 chain [ Equus asinus (ass) ]

Gene ID: 106839712, updated on 13-Mar-2024

Summary

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Gene symbol
COL4A5
Gene description
collagen type IV alpha 5 chain
See related
Ensembl:ENSEASG00005012063
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
54
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) X NC_052207.1 (101133342..101359210, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638105.1 (725990..954434, complement)

Chromosome X - NC_052207.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene insulin receptor substrate 4 Neighboring gene collagen type IV alpha 6 chain Neighboring gene uncharacterized LOC123282344 Neighboring gene autophagy related 4A cysteine peptidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-5(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052207.1 Reference ASM1607732v2

    Range
    101133342..101359210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014854622.2 → XP_014710108.1  collagen alpha-5(IV) chain isoform X7

    Related
    ENSEASP00005017439.2, ENSEAST00005018940.2
    Conserved Domains (2) summary
    pfam01391
    Location:1074 → 1132
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1573 → 1682
    C4; C-terminal tandem repeated domain in type 4 procollagen

  2. XM_044763328.1 → XP_044619263.1  collagen alpha-5(IV) chain isoform X2

    Conserved Domains (1) summary
    smart00111
    Location:1611 → 1724
    C4; C-terminal tandem repeated domain in type 4 procollagens

  3. XM_044763330.1 → XP_044619265.1  collagen alpha-5(IV) chain isoform X4

    Related
    ENSEASP00005043401.1, ENSEAST00005060922.1
    Conserved Domains (1) summary
    smart00111
    Location:1605 → 1718
    C4; C-terminal tandem repeated domain in type 4 procollagens

  4. XM_044763327.1 → XP_044619262.1  collagen alpha-5(IV) chain isoform X1

    Conserved Domains (1) summary
    smart00111
    Location:1611 → 1724
    C4; C-terminal tandem repeated domain in type 4 procollagens

  5. XM_044763329.1 → XP_044619264.1  collagen alpha-5(IV) chain isoform X3

    UniProtKB/TrEMBL
    A0A9L0IR06
    Conserved Domains (1) summary
    smart00111
    Location:1608 → 1721
    C4; C-terminal tandem repeated domain in type 4 procollagens

  6. XM_014854617.2 → XP_014710103.1  collagen alpha-5(IV) chain isoform X5

    UniProtKB/TrEMBL
    A0A9L0JQE6
    Related
    ENSEASP00005054643.1, ENSEAST00005048108.1
    Conserved Domains (2) summary
    pfam01391
    Location:1077 → 1135
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1582 → 1691
    C4; C-terminal tandem repeated domain in type 4 procollagen

  7. XM_014854618.2 → XP_014710104.1  collagen alpha-5(IV) chain isoform X6

    Related
    ENSEASP00005043071.1, ENSEAST00005081796.1
    Conserved Domains (2) summary
    pfam01391
    Location:1074 → 1132
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1579 → 1688
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
Heading Accession and Version

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