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LOC106740476 DNA mismatch repair protein Mlh3 [ Alligator mississippiensis (American alligator) ]

Gene ID: 106740476, updated on 23-Oct-2023

Summary

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Gene symbol
LOC106740476
Gene description
DNA mismatch repair protein Mlh3
Locus tag
Y1Q_0020775
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
MLH3
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 2 NC_081825.1 (261250050..261256349, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713214.1 (1489252..1494341)

Chromosome 2 - NC_081825.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2B subunit beta Neighboring gene DNA mismatch repair protein Mlh3 Neighboring gene zinc finger C2HC-type containing 1C Neighboring gene acylphosphatase 1 Neighboring gene NIMA related kinase 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mismatch repair complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA mismatch repair protein Mlh3
Names
mutL homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081825.1 Reference rAllMis1 Primary Assembly

    Range
    261250050..261256349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014611317.3 → XP_014466803.1  DNA mismatch repair protein Mlh3

    Conserved Domains (2) summary
    cd03486
    Location:206 → 350
    MutL_Trans_MLH3; MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to ...
    pfam02518
    Location:22 → 148
    HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Nucleotide Protein
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