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RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase [ Alligator mississippiensis (American alligator) ]

Gene ID: 106737011, updated on 8-May-2024

Summary

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Gene symbol
RNF19A
Gene description
ring finger protein 19A, RBR E3 ubiquitin protein ligase
Locus tag
Y1Q_0018004
See related
EnsemblRapid:ENSAMIG00015012125
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
RNF19B
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 3 NC_081826.1 (38625956..38730775)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017712118.1 (18159425..18263157)

Chromosome 3 - NC_081826.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109285214 Neighboring gene sorting nexin 31 Neighboring gene ankyrin repeat domain 46 Neighboring gene uncharacterized LOC109285211 Neighboring gene sperm associated antigen 1 Neighboring gene RNA polymerase II, I and III subunit K

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF19A
Names
E3 ubiquitin-protein ligase RNF19B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081826.1 Reference rAllMis1 Primary Assembly

    Range
    38625956..38730775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019495739.2 → XP_019351284.1  E3 ubiquitin-protein ligase RNF19A

    Related
    ENSAMIP00015015488.1, ENSAMIT00015022310.1

  2. XM_006268796.4 → XP_006268858.1  E3 ubiquitin-protein ligase RNF19A

    Related
    ENSAMIP00015015489.1, ENSAMIT00015022311.1
    Conserved Domains (4) summary
    smart00184
    Location:113 → 160
    RING; Ring finger
    smart00647
    Location:180 → 245
    IBR; In Between Ring fingers
    pfam01485
    Location:278 → 316
    IBR; IBR domain, a half RING-finger domain
    cl00570
    Location:342 → 431
    AzlC; AzlC protein

  3. XM_019495740.2 → XP_019351285.1  E3 ubiquitin-protein ligase RNF19A

Nucleotide Protein
Heading Accession and Version

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