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LOC106613153 protocadherin Fat 3 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106613153, updated on 6-Jun-2024

Summary

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Gene symbol
LOC106613153
Gene description
protocadherin Fat 3
See related
Ensembl:ENSSSAG00000085635
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
fat3
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Genomic context

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Location:
chromosome: ssa09
Exon count:
33
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa09 NC_059450.1 (142485189..142839942)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa09 NC_027308.1 (126090817..126423577, complement)

Chromosome ssa09 - NC_059450.1Genomic Context describing neighboring genes Neighboring gene galactose-3-O-sulfotransferase 2-like Neighboring gene leucine-rich repeat extensin-like protein 5 Neighboring gene melatonin receptor type 1B-B Neighboring gene proton-coupled amino acid transporter 4-like Neighboring gene uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin Fat 3
Names
FAT atypical cadherin 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059450.1 Reference Ssal_v3.1

    Range
    142485189..142839942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045724739.1 → XP_045580695.1  protocadherin Fat 3 isoform X1

    UniProtKB/TrEMBL
    A0A1S3T202

  2. XM_045724738.1 → XP_045580694.1  protocadherin Fat 3 isoform X1

    UniProtKB/TrEMBL
    A0A1S3T202

  3. XM_045724741.1 → XP_045580697.1  protocadherin Fat 3 isoform X3

    UniProtKB/TrEMBL
    A0A1S3T202

  4. XM_045724744.1 → XP_045580700.1  protocadherin Fat 3 isoform X6

    UniProtKB/TrEMBL
    A0A1S3T202

  5. XM_045724740.1 → XP_045580696.1  protocadherin Fat 3 isoform X2

    UniProtKB/TrEMBL
    A0A1S3T202
    Related
    ENSSSAP00000123143.1, ENSSSAT00000186245.1

  6. XM_045724742.1 → XP_045580698.1  protocadherin Fat 3 isoform X4

    UniProtKB/TrEMBL
    A0A1S3T202

  7. XM_045724743.1 → XP_045580699.1  protocadherin Fat 3 isoform X5

    UniProtKB/TrEMBL
    A0A1S3T202
    Related
    ENSSSAP00000133141.1, ENSSSAT00000191940.1

  8. XM_045724745.1 → XP_045580701.1  protocadherin Fat 3 isoform X7

    UniProtKB/TrEMBL
    A0A1S3T202
    Related
    ENSSSAP00000168854.1, ENSSSAT00000252694.1
Nucleotide Protein
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