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LOC106610328 CXXC finger 4 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106610328, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106610328
Gene description
CXXC finger 4
See related
Ensembl:ENSSSAG00000052885
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
cxxc4
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Genomic context

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Location:
chromosome: ssa04
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa04 NC_059445.1 (10865286..10893610, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa08 NC_027307.1 (18735944..18764270)

Chromosome ssa04 - NC_059445.1Genomic Context describing neighboring genes Neighboring gene S-methyl-5'-thioadenosine phosphorylase Neighboring gene Cyclin-dependent kinase 4 inhibitor B Neighboring gene uncharacterized LOC106610350 Neighboring gene methylcytosine dioxygenase TET2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon. Warren IA, et al. Genome Biol Evol, 2014 Jun 19. PMID 24951567, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methyl-CpG binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CXXC-type zinc finger protein 4
Names
CXXC finger protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059445.1 Reference Ssal_v3.1

    Range
    10865286..10893610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014209621.2 → XP_014065096.1  CXXC-type zinc finger protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A1S3SL79
    Conserved Domains (1) summary
    pfam02008
    Location:236 → 276
    zf-CXXC; CXXC zinc finger domain

  2. XM_014209620.2 → XP_014065095.1  CXXC-type zinc finger protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A1S3SL79
    Related
    ENSSSAP00000054141.1, ENSSSAT00000083427.2
    Conserved Domains (1) summary
    pfam02008
    Location:236 → 276
    zf-CXXC; CXXC zinc finger domain

  3. XM_014209623.2 → XP_014065098.1  CXXC-type zinc finger protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A1S3SL80
    Related
    ENSSSAP00000054153.2, ENSSSAT00000083441.2
    Conserved Domains (1) summary
    pfam02008
    Location:236 → 276
    zf-CXXC; CXXC zinc finger domain

  4. XM_014209622.2 → XP_014065097.1  CXXC-type zinc finger protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A1S3SL79
    Conserved Domains (1) summary
    pfam02008
    Location:236 → 276
    zf-CXXC; CXXC zinc finger domain
Nucleotide Protein
Heading Accession and Version

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